BackgroundTwo epidemiologically-unrelated clusters of Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae were detected among several healthcare facilities (HCF) in Finland by routine surveillance using whole genome sequencing (WGS).AimThe objective was to investigate transmission chains to stop further spread of the responsible strain.MethodsIn this observational retrospective study, cases were defined as patients with K. pneumoniae KPC-3 sequence type (ST)512 strain detected in Finland from August 2013 to May 2018. Environmental specimens were obtained from surfaces, sinks and toilets in affected wards. WGS was performed on K. pneumoniae cultures using Illumina MiSeq platform and data were analysed using Ridom SeqShere software K. pneumoniae core genome multilocus sequence typing (cgMLST) scheme. Epidemiological information of the cases was provided by HCFs.ResultsWe identified 20 cases in six HCFs: cluster 1 included 18 cases in five HCFs and cluster 2 two cases in one HCF. In cluster 1, a link with a foreign country was unclear, 6/18 cases without overlapping stay had occupied the same room in one of the five HCFs within > 3 years. In cluster 2, the index case was transferred from abroad, both cases occupied the same room 8 months apart. A strain identical to that of the two cases in cgMLST was isolated from the toilet of the room, suggesting a clonal origin.ConclusionsThe clusters were mostly related to case transfer between facilities and likely involved environmental transmission. We show that CPE surveillance using WGS and collaboration between hospitals are crucial to identify clusters and trace transmission chains.

译文

背景:通过全基因组测序(WGS)的常规监测,在芬兰的几个医疗机构(HCF)中发现了两个与流行病学无关的产肺炎克雷伯菌肺炎克雷伯菌(KPC)的肺炎克雷伯菌。方法在此观察性回顾性研究中,病例定义为2013年8月至2018年5月在芬兰检测到的肺炎克雷伯氏菌KPC-3序列型(ST)512菌株患者。受影响病房的厕所。使用Illumina MiSeq平台在肺炎克雷伯菌培养上进行WGS,并使用Ridom SeqShere软件对肺炎克雷伯菌核心基因组多基因座序列分型(cgMLST)方案进行数据分析。结果我们从6个HCF中获得了20例病例的流行病学信息。结果我们在6个HCF中确定了20例:1组中包括5个HCF中的18例,2组中1个HCF中的2例。在集群1中,与外国的联系尚不清楚,在3年内,有5/6个HCF中有6/18个没有重叠逗留的案件占据了同一房间。在第二类集群中,索引案例是从国外转移的,这两个案例相隔8个多月位于同一房间。从房间的洗手间中分离出与cgMLST的两例相同的菌株,表明是克隆起源。结论簇主要与设施之间的病例转移有关,可能涉及环境传播。我们表明,使用WGS和医院之间的协作进行的CPE监视对于识别集群和跟踪传输链至关重要。

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