In previous studies we showed that Ni(II) ions can hydrolytically cleave a peptide bond preceding Ser/Thr in peptides of a general sequence RN-(Ser/Thr)-Xaa-His-Zaa-RC, where RN and RC are any peptide sequences. A peptide library screening, assisted by accurate measurements of reaction kinetics for selected peptides, demonstrated the preference for bulky and aromatic residues at variable positions Xaa and Zaa [A. Krężel, E. Kopera, A.M. Protas, A. Wysłouch-Cieszyńska, J. Poznański, W. Bal, J. Am. Chem. Soc., 132 (2010) 3355-3366]. In this work we used a similar strategy to find out whether the next residue downstream to Zaa may influence the reaction rate. Using an Ac-Gly-Ala-Ser-Arg-His-Zaa-Baa-Arg-Leu-NH2 library, with Zaa and Baa positions containing all common amino acids except of Cys, we found a very strong preference for aromatic residues in both variable positions. This finding significantly limits the range of useful Xaa, Zaa and Baa substitutions, thus facilitating the search for optimal sequences for protein engineering applications [E. Kopera, A. Belczyk-Ciesielska, W. Bal, PLoS One 7 (2012) e36350].

译文

:在先前的研究中,我们表明,Ni(II)离子可以水解切割通用序列RN-(Ser / Thr)-Xaa-His-Zaa-RC的肽中Ser / Thr之前的肽键,其中RN和RC是肽序列。通过精确测量所选肽的反应动力学,进行肽库筛选,证明了在可变位置Xaa和Zaa上优先选择大体积和芳香族残基[A. Krężel,E。Kopera,上午Protas,A。Wysłouch-Cieszyńska,J。Poznański,W。Bal,J。Am。化学Soc。,132(2010)3355-3366]。在这项工作中,我们使用了类似的策略来确定Zaa下游的下一个残基是否会影响反应速率。使用Ac-Gly-Ala-Ser-Arg-His-Zaa-Baa-Arg-Leu-NH2文库,其中Zaa和Baa位置包含除Cys以外的所有常见氨基酸,我们发现这两种氨基酸都非常倾向于芳香族残基可变位置。这一发现大大限制了有用的Xaa,Zaa和Baa取代的范围,从而促进了蛋白质工程应用的最佳序列的搜索[E. Kopera,A. Belczyk-Ciesielska,W. Bal,PLoS One 7(2012)e36350]。

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