We have used 600 MHz 1H NMR spectroscopy data to determine the solution structure of a 31-residue domain of a murine class II major histocompatibility (MHC) protein. This domain, I-Ab(beta)-(60-90), binds to the superantigen staphylococcal enterotoxin A. Distance geometry and dynamical simulated annealing calculations were performed using NOESY- and COSY-deduced constraints. I-Ab(beta)-(60-90), which is mostly alpha-helical, is more similar to the corresponding region of the class II MHC protein HLA-DR1 than to the class I MHC protein HLA-A2. Arg-72 and Arg-80 lie on the same side of the helix and face away from the antigenic peptide binding groove. His-81, implicated in both superantigen and peptide binding, is located midway between the surface defined by Arg-72/Arg-80 and residues that define the inside of the peptide binding groove, allowing for its participation in both types of binding.

译文

我们已经使用600 MHz 1H NMR光谱数据确定了鼠类II类主要组织相容性(MHC)蛋白的31个残基域的溶液结构。该域I-Abβ-(60-90)与超抗原葡萄球菌肠毒素A结合。使用NOESY和COSY推导的约束条件进行距离几何结构和动态模拟退火计算。 I-Abβ-(60-90)主要是α-螺旋,与II类MHC蛋白HLA-DR1的相应区域相比,与I类MHC蛋白HLA-A2的对应区域更为相似。 Arg-72和Arg-80位于螺旋的同一侧,背对抗原肽结合槽。 His-81涉及超抗原和肽的结合,位于Arg-72 / Arg-80定义的表面与定义肽结合槽内部的残基之间的中间位置,允许其参与两种结合类型。 br>

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