A large-insert bacterial artificial chromosome (BAC) library has been constructed from male chicken genomic DNA using the new pBeloBAC11 vector. The library was prepared in two parts, such that two-thirds of the BAC library (2976 clones) had an average insert size of 490 kb (80 clones analyzed), after optimization of transformation and HMW DNA size-selection conditions. Fragments of increased average size were cloned by coupling a second size strategy using pulsed-field gel electrophoresis with optimized electroporation that favored transformation of Escherichia coli DH10B cells with very large plasmids. The initial one-third of this library (1440 clones) was constructed using the standard protocols and had an average insert size of 180 kb (40 clones analyzed). The overall library consists, at present, of 4416 clones with a combined insert size average of 390 kb (ranging from 25 to 725 kb). At least 95% of the BAC clones contain inserts. This is partially due to a second color selection performed with respect to white colonies, as well as to the optimized ligation conditions used. Based on the percentage of clones with inserts and the analysis of insert sizes, we estimate this library to represent a 0.8-fold coverage of the chicken genome. Southern blot analysis and fluorescence in situ hybridization were performed to confirm the identity of the BAC inserts with chicken genomic DNA. Analysis of large chicken BAC inserts showed that they were stably propagated for at least 120 cell generations. The results indicate that the BAC system is able to carry stably very large genomic fragments of chicken DNA, this system translating into a powerful tool for physical mapping and positional cloning of the chicken genome.

译文

已使用新的pBeloBAC11载体从雄性鸡基因组DNA构建了大插入细菌人工染色体 (BAC) 文库。该文库分两部分制备,使得在优化转化和HMW DNA大小选择条件后,BAC文库的3分之2 (2976个克隆) 的平均插入片段大小为490 kb (分析80个克隆)。通过使用脉冲场凝胶电泳与优化的电穿孔相结合的第二种尺寸策略来克隆平均尺寸增加的片段,该电穿孔有利于大肠杆菌DH10B细胞的转化具有非常大的质粒。该文库的初始3分之1 (1440个克隆) 使用标准方案构建,并且平均插入大小为180 kb (分析40个克隆)。目前,整个文库由4416个克隆组成,其平均插入片段的组合大小为390 kb (范围从25到725 kb)。至少95% BAC克隆包含插入物。这部分是由于对白色菌落进行了第二次颜色选择,以及所使用的优化的连接条件。基于具有插入片段的克隆的百分比和插入片段大小的分析,我们估计该文库代表鸡基因组的0.8倍覆盖率。进行Southern印迹分析和荧光原位杂交以确认BAC插入片段与鸡基因组DNA的身份。对大型鸡BAC插入物的分析表明,它们稳定繁殖至少120个细胞代。结果表明,BAC系统能够稳定地携带鸡DNA的非常大的基因组片段,该系统转化为鸡基因组的物理作图和位置克隆的强大工具。

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