Culturomics is a new postgenomics field that explores the microbial diversity of the human gut coupled with taxono-genomic strategy. Culturomics, and the microbiome science more generally, are anticipated to transform global health diagnostics and inform the ways in which gut microbial diversity contributes to human health and disease, and by extension, to personalized medicine. Using culturomics, we report in this study the description of strain CB1T ( = CSUR P1334 = DSM 29075), a new species isolated from a stool specimen from a 37-year-old Brazilian woman. This description includes phenotypic characteristics and complete genome sequence and annotation. Strain CB1T is a gram-negative aerobic and motile bacillus, exhibits neither catalase nor oxidase activities, and presents a 98.3% 16S rRNA sequence similarity with Pseudomonas putida. The 4,723,534 bp long genome contains 4239 protein-coding genes and 74 RNA genes, including 15 rRNA genes (5 16S rRNA, 4 23S rRNA, and 6 5S rRNA) and 59 tRNA genes. Strain CB1T was named Pseudomonas massiliensis sp. nov. and classified into the family Pseudomonadaceae. This study demonstrates the usefulness of microbial culturomics in exploration of human microbiota in diverse geographies and offers new promise for incorporating new omics technologies for innovation in diagnostic medicine and global health.

译文

:Culturomics是一个新的后基因组学领域,它探索人类肠道微生物的多样性以及分类基因组策略。预计文化学以及更广泛的微生物学科学将改变全球健康诊断方法,并为肠道微生物多样性促进人类健康和疾病以及扩展至个性化医学的方式提供信息。使用文化组学,我们在这项研究中报告了菌株CB1T(= CSUR P1334 = DSM 29075)的描述,该菌株是从一名37岁的巴西妇女的粪便样本中分离得到的新物种。该描述包括表型特征以及完整的基因组序列和注释。菌株CB1T是革兰氏阴性好氧和运动型芽孢杆菌,既不具有过氧化氢酶活性,也不具有氧化酶活性,并且与恶臭假单胞菌具有98.3%的16S rRNA序列相似性。该基因组长4,723,534 bp,包含4239个蛋白质编码基因和74个RNA基因,其中包括15个rRNA基因(5个16S rRNA,4个23S rRNA和6个5S rRNA)和59个tRNA基因。菌株CB1T被命名为马氏假单胞菌。十一月并归类为假单胞菌科(Pseudomonadaceae)。这项研究证明了微生物菌群学在探索人类在不同地区的微生物群中的有用性,并为结合新的组学技术在诊断医学和全球卫生领域的创新提供了新的希望。

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