Cyclic and congenital neutropenia are caused by mutations in the human neutrophil elastase (HNE) gene (ELA2), leading to an immunodeficiency characterized by decreased or oscillating levels of neutrophils in the blood. The HNE mutations presumably cause loss of enzyme activity, consequently leading to compromised immune system function. To understand the structural basis for the disease, we implemented methods from bioinformatics to analyze all the known HNE missense mutations at both the sequence and structural level. Our results demonstrate that the 32 different mutations have diverse effects on HNE structure and function, affecting structural disorder and aggregation tendencies, stability maintaining contacts, and electrostatic properties. A large proportion of the mutations are located at conserved amino acids, which are usually essential in determining protein structure and function. The majority of the disease-causing HNE missense mutations lead to major structural changes and loss of stability in the protein. A few mutations also affect functional residues, leading into decreased catalytic activity or altered ligand binding. Our analysis reveals the putative effects of all known missense mutations in HNE, thus allowing the structural basis of cyclic and congenital neutropenia to be elucidated. We have employed and analyzed a set of some 30 different methods for predicting the effects of amino acid substitutions. We present results and experience from the analysis of the applicability of these methods in the analysis of numerous genes, proteins, and diseases to reveal protein structure-function relationships and disease genotype-phenotype correlations.

译文

:循环性和先天性嗜中性白血球减少症是由人类嗜中性粒细胞弹性蛋白酶(HNE)基因(ELA2)突变引起的,导致免疫缺陷,其特征是血液中嗜中性粒细胞水平降低或振荡。 HNE突变可能导致酶活性下降,因此导致免疫系统功能受损。为了了解该疾病的结构基础,我们采用了生物信息学的方法来分析序列和结构水平上所有已知的HNE错义突变。我们的结果表明,这32种不同的突变对HNE的结构和功能具有多种影响,影响结构异常和聚集趋势,保持接触的稳定性以及静电性质。大部分突变位于保守氨基酸上,这通常是决定蛋白质结构和功能所必需的。大多数引起疾病的HNE错义突变会导致主要的结构变化和蛋白质稳定性的损失。一些突变也影响功能残基,导致催化活性降低或配体结合改变。我们的分析揭示了HNE中所有已知的错义突变的推定作用,因此可以阐明周期性和先天性中性粒细胞减少的结构基础。我们已经采用并分析了一组约30种不同的方法来预测氨基酸取代的影响。我们通过分析这些方法在分析众多基因,蛋白质和疾病中的适用性来提供结果和经验,以揭示蛋白质结构与功能的关系以及疾病的基因型与表型的相关性。

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