A sustained virological response is not achieved by a significant proportion of chronic hepatitis C patients treated with interferon-based regimens. Due to the associated side effects and high costs, therapy response markers have been thoroughly sought. Two Single Nucleotide Polymorphisms (SNPs), rs12979860 and rs8099917, which are located upstream from the IL28B gene, have been remarkably described to have a strong association with treatment efficacy. The aim of this study was to develop a straightforward method for genotyping such polymorphisms. A Polymerase Chain Reaction (PCR) followed by enzymatic restriction of amplicons was established for SNPs genotyping. Online computation resources were employed for retrieving reference sequences, such as the selection of oligonucleotides and restriction enzymes. Two pairs of primers were designed and validated for the amplification of segments encompassing rs12979860 (694bp) and rs8099917 (496bp) with common thermocycling parameters. The endonucleases Hpy166II and BsrDI were selected and used for allelic discrimination related to rs12979860 (C/T) and rs8099917 (T/G), respectively. The expected electropherotypes were confirmed for all possible genotypes in 75 blood samples. In addition, the results were validated by sequencing. The method constitutes a simple and reliable assay, which may be readily available for genotyping of rs12979860 and rs8099917 in laboratories that support hepatitis C treatment centers.

译文

:相当大比例的以干扰素为基础的慢性丙型肝炎患者无法获得持续的病毒学应答。由于相关的副作用和高昂的费用,已经彻底寻求了治疗反应的标志物。明显描述了位于IL28B基因上游的两个单核苷酸多态性(SNP)rs12979860和rs8099917,与治疗效果密切相关。这项研究的目的是开发一种用于对此类多态性进行基因分型的直接方法。建立了SNPs基因分型的聚合酶链式反应(PCR),然后进行酶促扩增子限制。在线计算资源被用于检索参考序列,例如寡核苷酸和限制酶的选择。设计并验证了两对引物,用于扩增具有常见热循环参数的rs12979860(694bp)和rs8099917(496bp)片段。选择核酸内切酶Hpy166II和BsrDI,分别用于与rs12979860(C / T)和rs8099917(T / G)相关的等位基因识别。确认了75种血液样本中所有可能的基因型的预期电表型。另外,通过测序验证了结果。该方法构成了一种简单而可靠的测定方法,可以很容易地在支持丙型肝炎治疗中心的实验室中对rs12979860和rs8099917进行基因分型。

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