A rapid increase and dominance of G9P[8] Rotavirus A strains occurred in northern Vietnam between 2016 and 2018, during which period there appeared three G9P[8] strains possessing short RNA patterns. To understand how the first-ever G9P[8] strains possessing short RNA patterns were formed, next generation sequencing technology was used to examine the whole genomes of the three strains, i.e., RVA/Human-wt/VNM/RVN16.1024/2016/G9P[8], RVA/Human-wt/VNM/RVN17.0879/2017/G9P[8], and RVA/Human-wt/VNM/RVN18.0197/2018/G9P[8], and those of seven representative G9P[8] strains possessing long RNA patterns. The VP7 genes of the short and long G9P[8] strains were > 99% identical, indicating that the origin was in the co-circulating, dominant, long G9P[8] strains. On the other hand, the VP4 genes likely derived from recently-emerging G1/G3/G8P[8] strains possessing the DS-1 backbone. At the lineage level, however, the backbone genes of any one strain differed from that of the other two in the VP1, VP3 or NSP4 gene. Moreover, even at the nucleotide sequence level of the backbone genes belonging to the same lineage, the identities between the three strains were lower than those expected for the strains deriving from an immediate, common ancestor. Thus, the three strains were likely formed by independent reassortment events in which the VP7 gene of the currently dominant G9P[8] strains was incorporated into co-circulating G1/G3/G8P[8] strains possessing similar yet distinct DS-1-like backbone genes. The observation that all of the three reassortant G9P[8] strains were detected only once among the prevalent, ordinary G9P[8] strains suggests that acquisition of the DS-1-like backbone genes unlikely provided selective advantage over the parental Wa-like G9P[8] strains.

译文

:2016年至2018年期间,越南北部发生了G9P [8]轮状病毒A株快速增加并占主导地位,在此期间,出现了3株具有短RNA模式的G9P [8]株。为了了解首个具有短RNA模式的G9P [8]菌株是如何形成的,采用了下一代测序技术来检查这三个菌株的整个基因组,即RVA / Human-wt / VNM / RVN16.1024 / 2016 /G9P[8]、RVA/Human-wt/VNM/RVN17.0879/2017/G9P[8]和RVA / Human-wt / VNM / RVN18.0197 / 2018 / G9P [8],以及七个代表G9P [8]菌株具有长RNA模式。短长G9P [8]菌株的VP7基因同源性> 99%,这表明其起源于共同流行的长G9P [8]菌株。另一方面,VP4基因可能源自具有DS-1主链的新近出现的G1 / G3 / G8P [8]菌株。但是,在谱系水平上,VP1,VP3或NSP4基因中任一菌株的主链基因都与其他两个菌株的主链基因不同。而且,即使在属于同一谱系的主链基因的核苷酸序列水平上,这三种菌株之间的同一性也比那些来自直接的共同祖先的菌株所期望的同一性低。因此,这三个菌株可能是由独立的重排事件形成的,其中将当前占主导地位的G9P [8]菌株的VP7基因掺入到具有相似但不同的DS-1-like的同循环G1 / G3 / G8P [8]菌株中。骨干基因。在所有常见的普通G9P [8]菌株中仅检测到三个重组G9P [8]菌株的一次观察结果表明,与亲代Wa-like G9P相比,DS-1样主链基因的获得不太可能提供选择性优势[8]菌株。

+1
+2
100研值 100研值 ¥99课程
检索文献一次
下载文献一次

去下载>

成功解锁2个技能,为你点赞

《SCI写作十大必备语法》
解决你的SCI语法难题!

技能熟练度+1

视频课《玩转文献检索》
让你成为检索达人!

恭喜完成新手挑战

手机微信扫一扫,添加好友领取

免费领《Endnote文献管理工具+教程》

微信扫码, 免费领取

手机登录

获取验证码
登录