We describe the crystallization and structure determination of the 30 S ribosomal subunit from Thermus thermophilus. Previous reports of crystals that diffracted to 10 A resolution were used as a starting point to improve the quality of the diffraction. Eventually, ideas such as the addition of substrates or factors to eliminate conformational heterogeneity proved less important than attention to detail in yielding crystals that diffracted beyond 3 A resolution. Despite improvements in technology and methodology in the last decade, the structure determination of the 30 S subunit presented some very challenging technical problems because of the size of the asymmetric unit, crystal variability and sensitivity to radiation damage. Some steps that were useful for determination of the atomic structure were: the use of anomalous scattering from the LIII edges of osmium and lutetium to obtain the necessary phasing signal; the use of tunable, third-generation synchrotron sources to obtain data of reasonable quality at high resolution; collection of derivative data precisely about a mirror plane to preserve small anomalous differences between Bijvoet mates despite extensive radiation damage and multi-crystal scaling; the pre-screening of crystals to ensure quality, isomorphism and the efficient use of scarce third-generation synchrotron time; pre-incubation of crystals in cobalt hexaammine to ensure isomorphism with other derivatives; and finally, the placement of proteins whose structures had been previously solved in isolation, in conjunction with biochemical data on protein-RNA interactions, to map out the architecture of the 30 S subunit prior to the construction of a detailed atomic-resolution model.

译文

我们描述了嗜热热热菌30 s核糖体亚基的结晶和结构测定。先前关于衍射至10 A分辨率的晶体的报道被用作提高衍射质量的起点。最终,在产生衍射超过3 A分辨率的晶体时,诸如添加底物或消除构象异质性的因素之类的想法被证明不如关注细节重要。尽管在过去十年中技术和方法有所改进,但由于不对称单元的大小,晶体可变性和对辐射损伤的敏感性,30 s亚基的结构确定提出了一些非常具有挑战性的技术问题。对确定原子结构有用的一些步骤是: 使用锇和镥的LIII边缘的异常散射来获得必要的定相信号; 使用可调谐的第三代同步加速器源来获得高分辨率的合理质量的数据; 精确收集关于镜像平面的衍生数据,以保持Bijvoet mate之间的微小异常差异,尽管存在广泛的辐射损伤和多晶体缩放; 晶体的预筛选,以确保质量、同构和有效利用稀缺的第三代同步加速器时间; 晶体在六氨合钴中预孵育,以确保与其他衍生物的同构; 最后,结合蛋白质-RNA相互作用的生化数据,将其结构先前已被隔离解决的蛋白质放置,在构建详细的原子分辨率模型之前,绘制出30 s子单元的体系结构。

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