RNA silencing refers to a series of nuclear and cytoplasmatic processes involved in the post-transcriptional regulation of gene expression or post-transcriptional gene silencing (PTGS), either by sequence-specific mRNA degradation or by translational arrest. The best characterized small RNAs are microRNAs (miRNAs), which predominantly perform gene silencing through post-transcriptional mechanisms. In this work we used bioinformatic approaches to identify the parasitic trematode Schistosoma mansoni sequences that are similar to enzymes involved in the post-transcriptional gene silencing mediated by miRNA pathway. We used amino acid sequences of well-known proteins involved in the miRNA pathway against S. mansoni genome and transcriptome databases identifying a total of 13 putative proteins in the parasite. In addition, the transcript levels of SmDicer1 and SmAgo2/3/4 were identified by qRT-PCR using cercariae, adult worms, eggs and in vitro cultivated schistosomula. Our results showed that the SmDicer1 and SmAgo2/3/4 are differentially expressed during schistosomula development, suggesting that the miRNA pathway is regulated at the transcript level and therefore may control gene expression during the life cycle of S. mansoni.

译文

RNA沉默是指通过序列特异性mRNA降解或通过翻译阻滞,参与基因表达的转录后调控或转录后基因沉默 (PTGS) 的一系列核和细胞质过程。表征最好的小rna是microRNAs (miRNAs),它们主要通过转录后机制进行基因沉默。在这项工作中,我们使用生物信息学方法来鉴定曼氏血吸虫的寄生吸虫序列,这些序列与miRNA途径介导的转录后基因沉默中涉及的酶相似。我们使用了涉及针对曼氏链球菌基因组的miRNA途径的众所周知的蛋白质的氨基酸序列和转录组数据库,鉴定了该寄生虫中总共13种假定的蛋白质。此外,使用尾蚴,成虫,卵和体外培养的血吸虫,通过qRT-PCR鉴定SmDicer1和SmAgo2/3/4的转录水平。我们的结果表明SmDicer1和SmAgo2/3/4在血吸虫发育过程中差异表达,这表明miRNA途径在转录水平上受到调节,因此可能在曼氏链球菌的生命周期中控制基因表达。

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