Proteins are often classified in a binary fashion as either structured or disordered. However this approach has several deficits. Firstly, protein folding is always conditional on the physiochemical environment. A protein which is structured in some circumstances will be disordered in others. Secondly, it hides a fundamental asymmetry in behavior. While all structured proteins can be unfolded through a change in environment, not all disordered proteins have the capacity for folding. Failure to accommodate these complexities confuses the definition of both protein structural domains and intrinsically disordered regions. We illustrate these points with an experimental study of a family of small binding domains, drawn from the RNA polymerase of mumps virus and its closest relatives. Assessed at face value the domains fall on a structural continuum, with folded, partially folded, and near unstructured members. Yet the disorder present in the family is conditional, and these closely related polypeptides can access the same folded state under appropriate conditions. Any heuristic definition of the protein domain emphasizing conformational stability divides this domain family in two, in a way that makes no biological sense. Structural domains would be better defined by their ability to adopt a specific tertiary structure: a structure that may or may not be realized, dependent on the circumstances. This explicitly allows for the conditional nature of protein folding, and more clearly demarcates structural domains from intrinsically disordered regions that may function without folding.

译文

:Protein通常以二进制方式分类为结构化或无序。但是,这种方法存在一些缺陷。首先,蛋白质折叠总是以物理化学环境为条件。在某些情况下结构化的蛋白质在其他情况下会变得无序。其次,它掩盖了行为的基本不对称性。虽然所有结构化蛋白质都可以通过环境变化来展开,但并非所有无序蛋白质都具有折叠能力。无法适应这些复杂性会混淆蛋白质结构域和内在无序区域的定义。我们通过对腮腺炎病毒及其近亲的RNA聚合酶绘制的一系列小结合域的实验研究说明了这些观点。按面值评估,这些域位于结构连续体上,具有折叠,部分折叠和接近非结构化的成员。然而,该家族中存在的病症是有条件的,并且这些紧密相关的多肽可以在适当的条件下进入相同的折叠状态。强调构象稳定性的蛋白质结构域的任何启发式定义都将该结构域家族分为两部分,这是没有生物学意义的。结构域可以采用特定的三级结构的能力来更好地定义:根据情况,该结构可能会实现,也可能不会实现。这明确地允许蛋白质折叠的条件性质,并且更清楚地从可能无折叠而起作用的内在无序的区域划定结构域。

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