A primer extension (toeprinting) assay was used to monitor selection by ribosomes of the first versus the second AUG codon as a function of introducing mutations on the 3' side (positions +4, +5 and +6) of the first AUG codon. Six different flanking codons starting with G (GCG, GCU, GCC, GCA, GAU and GGA) strongly augmented selection of AUG#1 when compared with matched mRNAs that had A or C instead of G in position +4. Augmentation by G in position +4 failed only when it was combined with U in position +5, as in the sequence augGUA. In contrast with the usual enhancing effect of introducing G in position +4, most mutations in position +5 had no discernible effect, as shown with the series augANA (where N = C, A, G or U) and the series augCNA. AUG codon recognition was also unaffected by mutations in position +6, as shown by testing four mRNAs that had augCCN as the start site. Thus the primary sequence context that augments the recognition of AUG start codons does not appear generally to extend beyond G in position +4. When the toeprinting assay was used with mRNAs that initiate translation at CUG instead of AUG, cugGAU was not recognized better than cugGGU, contradicting the hypothesis that initiation at non-AUG codons might be favored by A instead of G in position +5.

译文

使用引物延伸(印迹)测定法来监测第一和第二AUG密码子的核糖体的选择,其作为在第一AUG密码子的3'侧(位置4、5和6)上引入突变的函数。与匹配的在位置4有A或C而不是G的mRNA相比,以G开头的六个不同的侧翼密码子(GCG,GCU,GCC,GCA,GAU和GGA)大大增强了对AUG#1的选择。仅当它与位置5的U组合时失败,如序列augGUA所示。与在位置4引入G的通常增强作用相反,在位置5的大多数突变没有明显的作用,如augANA系列(其中N = C,A,G或U)和augCNA系列所示。 AUG密码子识别也不受位置6突变的影响,如测试以augCCN为起始位点的四个mRNA所显示的。因此,增强对AUG起始密码子识别的一级序列通常不会延伸到位置4的G范围之外。当将脚印法与在CUG而非AUG处起始翻译的mRNA一起使用时,cugGAU的识别度不如cugGGU,与以下假设相矛盾:在非AUG密码子处的起始可能会被位置5的A而不是G所偏爱。

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